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subprocess.CalledProcessError: Command '['ninja', '-v']' returned non-zero exit status 1. #6
Description
`Loading /public/home/yqzhang/modeltest/0_path_model/AStarNet-master/datasets/knowledge_graphs/fb15k237_train.tx
Loading /public/home/yqzhang/modeltest/0_path_model/AStarNet-master/datasets/knowledge_graphs/fb15k237_valid.tx
Loading /public/home/yqzhang/modeltest/0_path_model/AStarNet-master/datasets/knowledge_graphs/fb15k237_test.txt
10:25:25 FB15k237(
#entity: 14541
#relation: 237
#triplet: 310116
)
10:25:25 #train: 272115, #valid: 17535, #test: 20466
Traceback (most recent call last):
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 1906, in _run_ninja_build
env=env)
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/subprocess.py", line 512, in run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['ninja', '-v']' returned non-zero exit status 1.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "script/run.py", line 58, in
solver = util.build_solver(cfg, dataset)
File "/public/home/yqzhang/modeltest/0_path_model/AStarNet-master/reasoning/util.py", line 104, in build_solver
task = core.Configurable.load_config_dict(cfg.task)
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/core/core.py", line 269, in load_config_dict
v = Configurable.load_config_dict(v)
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/core/core.py", line 269, in load_config_dict
v = Configurable.load_config_dict(v)
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/core/core.py", line 277, in load_config_dict
return cls(**new_config)
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/core/core.py", line 296, in wrapper
return init(self, *args, **kwargs)
File "/public/home/yqzhang/modeltest/0_path_model/AStarNet-master/reasoning/layer.py", line 55, in init
functional.generalized_rspmm(adjacency, relation_input, input, sum="add", mul="mul")
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/layers/functional/spmm.py", line 378, in generalized_rspmm
return Function.apply(sparse.coalesce(), relation, input)
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/layers/functional/spmm.py", line 174, in forward
forward = spmm.rspmm_add_mul_forward_cpu
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/utils/torch.py", line 26, in getattr
return getattr(self.module, key)
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/utils/decorator.py", line 102, in get
result = self.func(obj)
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/utils/torch.py", line 32, in module
self.verbose, **self.kwargs)
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 1296, in load
keep_intermediates=keep_intermediates)
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 1518, in jit_compile
is_standalone=is_standalone)
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 1626, in write_ninja_file_and_build_library
error_prefix=f"Error building extension '{name}'")
File "/public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/utils/cpp_extension.py", line 1916, in run_ninja_build
raise RuntimeError(message) from e
RuntimeError: Error building extension 'spmm': [1/5] c++ -MMD -MF rspmm.o.d -DTORCH_EXTENSION_NAME=spmm -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="gcc" -DPYBIND11_STDLIB="libstdcpp" -DPYBIND11_BUILD_ABI="cxxabi1011" -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/TH -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/THC -isystem /public/home/yqzhang/cuda/cuda11/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/include/python3.7m -D_GLIBCXX_USE_CXX11_ABI=0 -fPIC -std=c++14 -Ofast -fopenmp -DAT_PARALLEL_OPENMP -DCUDA_OP -c /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/layers/functional/extension/rspmm.cpp -o rspmm.o
[2/5] c++ -MMD -MF spmm.o.d -DTORCH_EXTENSION_NAME=spmm -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="gcc" -DPYBIND11_STDLIB="libstdcpp" -DPYBIND11_BUILD_ABI="cxxabi1011" -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/TH -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/THC -isystem /public/home/yqzhang/cuda/cuda11/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/include/python3.7m -D_GLIBCXX_USE_CXX11_ABI=0 -fPIC -std=c++14 -Ofast -fopenmp -DAT_PARALLEL_OPENMP -DCUDA_OP -c /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/layers/functional/extension/spmm.cpp -o spmm.o
[3/5] /public/home/yqzhang/cuda/cuda11/bin/nvcc -DTORCH_EXTENSION_NAME=spmm -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="gcc" -DPYBIND11_STDLIB="libstdcpp" -DPYBIND11_BUILD_ABI="cxxabi1011" -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/TH -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/THC -isystem /public/home/yqzhang/cuda/cuda11/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/include/python3.7m -D_GLIBCXX_USE_CXX11_ABI=0 -D__CUDA_NO_HALF_OPERATORS -D__CUDA_NO_HALF_CONVERSIONS -D__CUDA_NO_BFLOAT16_CONVERSIONS -D__CUDA_NO_HALF2_OPERATORS --expt-relaxed-constexpr -gencode=arch=compute_86,code=compute_86 -gencode=arch=compute_86,code=sm_86 --compiler-options '-fPIC' -O3 -std=c++14 -c /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/layers/functional/extension/rspmm.cu -o rspmm.cuda.o
FAILED: rspmm.cuda.o
/public/home/yqzhang/cuda/cuda11/bin/nvcc -DTORCH_EXTENSION_NAME=spmm -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="gcc" -DPYBIND11_STDLIB="libstdcpp" -DPYBIND11_BUILD_ABI="cxxabi1011" -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/TH -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/THC -isystem /public/home/yqzhang/cuda/cuda11/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/include/python3.7m -D_GLIBCXX_USE_CXX11_ABI=0 -D__CUDA_NO_HALF_OPERATORS -D__CUDA_NO_HALF_CONVERSIONS -D__CUDA_NO_BFLOAT16_CONVERSIONS -D__CUDA_NO_HALF2_OPERATORS --expt-relaxed-constexpr -gencode=arch=compute_86,code=compute_86 -gencode=arch=compute_86,code=sm_86 --compiler-options '-fPIC' -O3 -std=c++14 -c /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/layers/functional/extension/rspmm.cu -o rspmm.cuda.o
/usr/include/c++/11/bits/std_function.h:435:145: error: parameter packs not expanded with ‘...’:
435 | function(Functor&& f)
| ^
/usr/include/c++/11/bits/std_function.h:435:145: note: ‘ArgTypes’
/usr/include/c++/11/bits/std_function.h:530:146: error: parameter packs not expanded with ‘...’:
530 | operator=(Functor&& f)
| ^
/usr/include/c++/11/bits/std_function.h:530:146: note: ‘ArgTypes’
[4/5] /public/home/yqzhang/cuda/cuda11/bin/nvcc -DTORCH_EXTENSION_NAME=spmm -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="gcc" -DPYBIND11_STDLIB="libstdcpp" -DPYBIND11_BUILD_ABI="cxxabi1011" -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/TH -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/THC -isystem /public/home/yqzhang/cuda/cuda11/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/include/python3.7m -D_GLIBCXX_USE_CXX11_ABI=0 -D__CUDA_NO_HALF_OPERATORS -D__CUDA_NO_HALF_CONVERSIONS -D__CUDA_NO_BFLOAT16_CONVERSIONS -D__CUDA_NO_HALF2_OPERATORS --expt-relaxed-constexpr -gencode=arch=compute_86,code=compute_86 -gencode=arch=compute_86,code=sm_86 --compiler-options '-fPIC' -O3 -std=c++14 -c /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/layers/functional/extension/spmm.cu -o spmm.cuda.o
FAILED: spmm.cuda.o
/public/home/yqzhang/cuda/cuda11/bin/nvcc -DTORCH_EXTENSION_NAME=spmm -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="gcc" -DPYBIND11_STDLIB="libstdcpp" -DPYBIND11_BUILD_ABI="cxxabi1011" -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/torch/csrc/api/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/TH -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torch/include/THC -isystem /public/home/yqzhang/cuda/cuda11/include -isystem /public/home/yqzhang/anaconda3/envs/kgmodel/include/python3.7m -D_GLIBCXX_USE_CXX11_ABI=0 -D__CUDA_NO_HALF_OPERATORS -D__CUDA_NO_HALF_CONVERSIONS -D__CUDA_NO_BFLOAT16_CONVERSIONS -D__CUDA_NO_HALF2_OPERATORS_ --expt-relaxed-constexpr -gencode=arch=compute_86,code=compute_86 -gencode=arch=compute_86,code=sm_86 --compiler-options '-fPIC' -O3 -std=c++14 -c /public/home/yqzhang/anaconda3/envs/kgmodel/lib/python3.7/site-packages/torchdrug/layers/functional/extension/spmm.cu -o spmm.cuda.o
/usr/include/c++/11/bits/std_function.h:435:145: error: parameter packs not expanded with ‘...’:
435 | function(_Functor&& __f)
| ^
/usr/include/c++/11/bits/std_function.h:435:145: note: ‘_ArgTypes’
/usr/include/c++/11/bits/std_function.h:530:146: error: parameter packs not expanded with ‘...’:
530 | operator=(_Functor&& __f)
| ^
/usr/include/c++/11/bits/std_function.h:530:146: note: ‘_ArgTypes’
ninja: build stopped: subcommand failed.`
Hello,
Thanks for your nice work. When I try to replicate your results in GPU, I meet the error about C++ spmm.
Would you know how to fix this? Thanks, and have a nice day!
Activity
Wendysigh commentedon Oct 9, 2024
I also encounter similar issues. don't how to fix
Wendysigh commentedon Oct 9, 2024
I found the solution discussed in previous issue: #3
the problem is caused by TorchDrug, the missing header file in different versions, e.g., "ATen/SparseTensorUtils.h" should be change to "ATen/native/SparseTensorUtils.h".
Irena-Zhang commentedon Oct 29, 2024
Thanks for your tip! I will try to modify it.
rainbowww24 commentedon Nov 12, 2025
Hello, I’m also facing the same issue. May I ask if you have found a solution?