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vanvalenlab

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  1. deepcell-label deepcell-label Public

    Cloud-based data annotation tools for biological images

    JavaScript 86 18

  2. kiosk-console kiosk-console Public

    DeepCell Kiosk Distribution for Kubernetes on GKE and AWS

    Shell 39 8

  3. deepcell-applications deepcell-applications Public

    Run DeepCell Applications

    Python 10 5

  4. deepcell-tf deepcell-tf Public

    Deep Learning Library for Single Cell Analysis

    Python 481 111

Repositories

Showing 10 of 45 repositories
  • torch-tracking Public

    PyTorch implementation of Caliban

    vanvalenlab/torch-tracking's past year of commit activity
    Python 0 1 0 1 Updated Nov 10, 2026
  • torch-spots Public

    PyTorch implementation of SpotNet and its decoding in PyTorch

    vanvalenlab/torch-spots's past year of commit activity
    Python 1 0 0 1 Updated Nov 10, 2026
  • deepcell-auth Public

    Authentication client for deepcell ecosystem

    vanvalenlab/deepcell-auth's past year of commit activity
    Python 0 Apache-2.0 2 0 0 Updated Oct 30, 2026
  • deepcell-label Public

    Cloud-based data annotation tools for biological images

    vanvalenlab/deepcell-label's past year of commit activity
    JavaScript 86 Apache-2.0 18 61 (13 issues need help) 8 Updated Oct 30, 2026
  • cellSAM Public

    Codebase for "A Foundation Model for Cell Segmentation"

    vanvalenlab/cellSAM's past year of commit activity
    Python 220 Apache-2.0 39 41 8 Updated Oct 28, 2026
  • cryosearch Public

    Cryo electron tomography docking

    vanvalenlab/cryosearch's past year of commit activity
    Python 2 0 0 0 Updated Sep 26, 2026
  • torch-mesmer Public

    pytorch implementation of mesmer

    vanvalenlab/torch-mesmer's past year of commit activity
    Python 1 Apache-2.0 1 10 1 Updated Sep 22, 2026
  • ftu_dev Public
    vanvalenlab/ftu_dev's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 3, 2026
  • deepcell-types Public
    vanvalenlab/deepcell-types's past year of commit activity
    Python 10 Apache-2.0 5 8 0 Updated Aug 11, 2026
  • DeepCellTypes-2026_Wang_et_al Public
    vanvalenlab/DeepCellTypes-2026_Wang_et_al's past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Jul 13, 2026
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