✏️ A versatile DNA sequence optimizer
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Nov 5, 2025 - Python
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sequence-design
Here are 19 public repositories matching this topic...
👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.
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May 10, 2025 - Python
🎨 Python library to plot multi-part genetic constructs
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Apr 9, 2025 - Python
Batch domestication of genetic parts with Python
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May 12, 2025 - Python
State of the art software for RNA sequence design. The first to solve the Eterna benchmark!
bioinformatics scientific-computing rna secondary-structure simulation-modeling sequence-design bioinformatics-tool eterna
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Jul 17, 2024 - Python
🔗 Short overhangs design for DNA assembly
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Jun 8, 2022 - Python
[Adv. Sci. 2025] PRO-LDM: A Conditional Latent Diffusion Model for Protein Sequence Design and Functional Optimization
machine-learning computational-biology protein-design sequence-design diffusion-models latent-diffusion-models
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Jul 11, 2025 - Python
✂️ Design compact restriction sites arrays (python utility)
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Apr 9, 2025 - Python
🔮 Predict DNA assembly clone validity rates - powered by Kappa
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Jul 24, 2020 - Python
Python client for Ginkgo's AI model API
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Mar 10, 2025 - Python
A PyPulseq-based client/server MR sequence design toolbox.
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Nov 10, 2026 - Python
A Python client for communication between Pulseq interpreter and Pulseq design server.
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Oct 31, 2024 - Python
Fast drop-in PyPulseq replacement over a C++ sequence core, with hardware safety checks.
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Nov 10, 2026 - Python
ProteinMPNN MCP server for protein sequence design (inverse folding)
bioinformatics deep-learning mcp protein-design inverse-folding protein-engineering sequence-design model-context-protocol
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Feb 23, 2026 - Python
Design DNA sequences that balance supplied motif models.
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Nov 4, 2026 - Python
SGE job scheduler configured pipeline LigandMPNN (3x) <--> Rosetta Fast Relax (3x) --> Raptor-X-Single --> Chai-1 --> Analysis
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Oct 13, 2026 - Python
Scalarization-free multi-objective preference alignment for generative CRISPR sgRNA design — standard DPO over Pareto-dominance preferences. Reproducible seeded pipeline, publication figures, and reviewer responses. Runs in <0.6 GB VRAM.
bioinformatics deep-learning genomics pytorch generative-model crispr multi-objective-optimization pareto preference-learning sequence-design sgrna dpo guide-rna rlhf direct-preference-optimization
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Aug 15, 2026 - Python
LigandMPNN MCP server for ligand-aware scaffold-based sequence generation (inverse folding)
bioinformatics deep-learning mcp protein-design inverse-folding protein-engineering sequence-design model-context-protocol
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Sep 27, 2026 - Python
Public code for AI-based DNA primer design using auto-encoder, convolutional neural network and Cox regression model.
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May 20, 2024 - Python
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