Rapid standardisation and quality control of GWAS or QTL summary statistics
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
Mixed models @lme4 + custom covariances + parameter constraints
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.
Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
Association testing for genetically regulated co-expression.
R package for random-effect multiple QTL mapping in autopolyploids
A workflow based on QTLtools to run cis- and trans-QTL analyses.
echoverse module: Locus plot creation for fine-mapping and colocalization studies.
QTLTableMiner++ tool for mining tables in scientific articles
A comprehensive QTL analysis tool by multivariate linear mixed model.
Pipeline to compute associations between genome-wide trans QTL scores and phenotype of interest
Scripts for various molecular quantitative trait locus (xQTL) analysis.
MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading
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