outbreak

Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project

🍄 spora: Streamlined Phylogenomic Outbreak Report Analysis

Coronavirus genome analysis.

A Telegram bot to get the data of the COVID-19 (novel coronavirus) outbreak in Italy

ArcGIS Pro toolbox to extract and transform case and contact data from a Go.Data instance

A Discord bot created to track the COVID-19 outbreak

This geospatial project maps Marburg virus transmission, a zoonotic disease with high case fatality rates in Africa. It highlights the need for medical treatment, isolation, and quarantine measures. Vaccines and contact tracing can limit the global spread of epidemics

Publication-linked DENV-1 and DENV-2 workflow for consensus generation, phylogeny and mutation analysis

Publication-linked RSV-A and RSV-B whole-genome analysis workflow for the Islamabad 2022–2023 study

Stochastic Outbreak Learning and Variance-Aware Regression (SOLVAR) is an adaptive ensemble of ML and endemic-epidemic experts for probabilistic, MDRO-specific outbreak early warning, designed for infection control teams using hospital microbiology data.

Publication-linked CV-A24v outbreak-genomics workflow for assembly, mapping, phylogeny and amino-acid comparison

OUTBREAK! is a dashboard that automatically identifies potential outbreaks of CDC nationally notifiable diseases using weekly data and DeepAR forecasting on AWS.

Publication-linked mumps virus genotype G workflow for consensus, phylogeny and mutation analysis