Microbial Culture Media Knowledge Graph - Comprehensive collection of 10,000+ culture media recipes from major international repositories with LinkML schema, ontology grounding, and browser-based exploration
A phylogenetically-aware framework for detecting evolutionary associations between binary traits
Deep learning-based instance segmentation tool for roundish objects in 2D and 2D+t data
A Snakemake workflow for the post-processing of microbial genome assemblies.
Targeted Probe Design Pipeline. Using mWGS genome bin clusters, prokka annotation predictions, and blast+ databases for generation, processing and filtering probe sequences.
Microbial Community Mechanisms Knowledge Base - LinkML-based modeling of microbial communities with evidence-based ecological interactions
Targeted Probe Design Pipeline. Using mWGS genome bin clusters, prokka annotation predictions, and blast+ databases for generation, processing and filtering probe sequences.
This repository contains python code used to create figures in the accompanying manuscript.
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