A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
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Updated
Mar 30, 2026 - Python
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
an interactive explorer for flow cytometry data
Free, open-source flow cytometry analysis workbench for conventional, spectral and mass cytometry. Gating, compensation, spectral unmixing, QC, clustering/UMAP, statistics and publication figures. Reads/writes FlowJo & Gating-ML. Runs locally, your data never leaves your machine. Includes MCP server for AI agents, and Python and R API clients.
Browser-based dye titration scoring for FlowJo exports in CHO functional flow cytometry panels.
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To associate your repository with the flowjo topic, visit your repo's landing page and select "manage topics."