🧪 Ultrafast bisulfite
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Apr 23, 2024 - Python
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epitranscriptomics
Here are 15 public repositories matching this topic...
🧪 Pipeline for detecting Ψ modification
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May 8, 2024 - Python
🧪 Optimized protocol for m6A-SAC-seq
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Jun 16, 2025 - Python
Metagene Profiling Analysis and Visualization
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Oct 31, 2025 - Python
Robust tRNA modification discovery from Nanopore direct tRNA sequencing
bioinformatics snakemake nanopore gpu-acceleration trna epitranscriptomics rna-modifications direct-rna-sequencing
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Nov 5, 2026 - Python
NanoSpeech: a custom modification-aware basecaller
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Sep 17, 2026 - Python
CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.
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May 23, 2022 - Python
Predicting m6A RNA modifications from Nanopore direct RNA-seq with a site-level graph neural network ensemble, applied to the SG-NEx cell lines.
react machine-learning bioinformatics nanopore data-visualization nus m6a epitranscriptomics graph-neural-networks direct-rna-sequencing sg-nex rna-modification
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Nov 7, 2026 - Python
NanoListener: a small suite of Python scripts to create custom training datasets for modification-aware basecaller models.
bioinformatics data-augmentation training-data epitranscriptomics datasets-preparation sequencing-data
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Jul 7, 2026 - Python
EpiRNA-Scanner, a publicly deployed web framework that processes sequences from 41 bases to over 100,000 bases without manual preprocessing. The system introduces Epitranscriptomic Boundary Contrast Scoring (EBCS), producing single-nucleotide resolution predictions anchored to degenerate DRACH motifs.
machine-learning bioinformatics deep-learning computational-biology cnn software rna biotechnology epitranscriptomics bioinformatics-software epirna
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Jun 14, 2026 - Python
Hierarchical Bayesian framework for RNA modification detection from nanopore direct RNA sequencing (CUDA-accelerated DTW + HMM)
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Jul 14, 2026 - Python
Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.
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Dec 16, 2023 - Python
Reanalisis de direct RNA-seq (Nanopore) del mutante anac017 de Arabidopsis con el pipeline K-CHOPORE.
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Jun 26, 2026 - Python
Cross-method single-base m⁶A curation and computational prime-editing pegRNA candidates; code and QC only, row-level data pending.
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Oct 4, 2026 - Python
Nextflow pipeline for benchmarking comparative RNA modification detection tools
workflow benchmarking nanopore pipeline nextflow alignment rna benchmarking-framework epitranscriptomics resquiggle
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Nov 8, 2026 - Python
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