Small Animal Magnetic Resonance Imaging via Python.
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Mar 4, 2024 - Python
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dwi
Here are 22 public repositories matching this topic...
Tools for creating full TVB models from individual anatomical scans
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Feb 19, 2021 - Python
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
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Oct 29, 2026 - Python
This repository contains the code regarding our publication: Improved unsupervised physics-informed deep learning for intravoxel-incoherent motion modeling and evaluation in pancreatic cancer patients
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Oct 20, 2025 - Python
Reconstruction of preprocessed q-space images (dMRI)
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Nov 10, 2026 - Python
A Python-based interactive tool for virtual dissection and manual refinement of diffusion MRI tractography. Supports .trk, .tck, .trx, .vtk, .vtp formats with streamline selection-deletion, ROI drawing, FreeSurfer parcellation, and whole-brain visualization.
python gui quality-control tool toolbox trx vtk trk dwi tck diffusion-mri tractography vtp virtual-dissection
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Oct 6, 2026 - Python
Software that functionally segments white matter connections to generate task-specific subcomponents of fiber bundles.
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Jan 5, 2024 - Python
A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)
mri pet neuroimaging fmri preprocessing dwi brain-imaging magnetic-resonance-imaging positron-emission-tomography dmri eddy-current head-motion nipreps
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Nov 2, 2026 - Python
Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.
deep-learning supervised-learning adc convolutional-neural-networks dwi prostate retinanet prostate-cancer tensorflow-estimator seresnet 2d-detection mri-data tensorflow-keras t2w
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Sep 30, 2020 - Python
Code used for study design, MRI data processing, statistical analysis and figures in the article U-shape short-range extrinsic connectivity organisation around the human central sulcus
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May 9, 2021 - Python
PUMI: neuroimaging Pipelines Using Modular workflow Integration
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Mar 15, 2026 - Python
[NeuroImage 2021] DDSeg-Torch: PyTorch Reimplementation of Deep Learning Based Segmentation of Brain Tissue from Diffusion MRI
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Nov 3, 2026 - Python
DWI model fitting & b-value extrapolation for 4D NIfTI/DICOM. Python CLI + Electron/React GUI with FastAPI backend: 4-step wizard, canvas NIfTI viewer, interactive ROI, 16 diffusion models (ADC, DKI, IVIM, DDC, DDVD, CTRW, FROC), and multi-b extrapolation.
electron react python typescript dicom medical-imaging scientific-computing neuroimaging adc nifti dwi diffusion-mri ivim dki fastapi mri-analysis
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Nov 1, 2026 - Python
Python toolkit for fast estimation of IVIM & Kurtosis diffusion MRI parameters using Machine Learning (Random Forest, Extra Trees, MLP).
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Dec 23, 2025 - Python
Diffusion Weighted Imaging (DWI) line artifact removal
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Jun 30, 2023 - Python
GPU-accelerated curve fitting on NVIDIA GPUs for Pyneapple
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Oct 19, 2026 - Python
A tool for ingressing outputs from other processing pipelines (e.g., HCP, UKB) for use in QSIRecon.
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Apr 6, 2026 - Python
Pyneapple is an advanced tool for analysing multi-exponential signal data in MR DWI images.
mri curve-fitting mri-images dwi diffusion non-linear-regression diffusion-models non-negative-least-squares
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Oct 24, 2026 - Python
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