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smithlabcode
dnmtools
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Optimizing duplicate remover
- #45
#45
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andrewdavidsmith
merged 5 commits into
master
smithlabcode/dnmtools:master
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optimizing_duplicate_remover
smithlabcode/dnmtools:optimizing_duplicate_remover
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Jun 19, 2023
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Optimizing duplicate remover
#45
andrewdavidsmith
merged 5 commits into
master
smithlabcode/dnmtools:master
from
optimizing_duplicate_remover
smithlabcode/dnmtools:optimizing_duplicate_remover
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Commits
Commits on Jun 19, 2023
Adding direct use of htslib into uniq and change the filename from duplicate-remover to uniq
andrewdavidsmith
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cf01da2
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Renaming a file
andrewdavidsmith
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9628132
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More options for output format and fixed a bug when reading input in sam format instead of bam format.
andrewdavidsmith
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59db7a3
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Removed option to disable sort check as it did nothing for speed. Allowing option to use more threads for compression/decompression
andrewdavidsmith
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4ecf656
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Using a thread pool instead of setting number of threads. Also changed how good reads and bases are tabulated for in and out to be reported in the stats output.
andrewdavidsmith
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8883d92
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