Repository navigation
Point sizes disagree between matplotlib and datashader #315
Description
For plotting points with matplotlib, we use the s argument of scatter(). The square root of s specifies the width and height of the markers in points.
In the datashader approach, we use ds.tf.spread(agg, px=px) to regulate the size of the markers. Here, px is calculated like this: px = int(np.round(np.sqrt(render_params.size))), to make the behavior agree to the matplotlib approach.
Problem: If you alter the dpi in pl.show(), the point size of the datashader points remains the same, whileit changes for matplotlib, leading to different sizes:
dpi=100, mpl=blue, ds=white
blob.pl.render_points(element="blobs_points", size=400, color="blue").pl.render_points(element="blobs_points", size=400, color="white", method="datashader", alpha=1).pl.show(dpi=100)
dpi=200, mpl=blue, ds=white
blob.pl.render_points(element="blobs_points", size=400, color="blue").pl.render_points(element="blobs_points", size=400, color="white", method="datashader", alpha=1).pl.show(dpi=200)
dpi=50, ds=blue, mpl=white (note: colors and order swapped!)
blob.pl.render_points(element="blobs_points", size=400, color="blue", method="datashader", alpha=1).pl.render_points(element="blobs_points", size=400, color="white").pl.show(dpi=50)
Activity
Sonja-Stockhaus commentedon Jul 31, 2024
Btw I think for
dpi=100, the mpl points are slightly larger than the ds points because marker edges are drawn (default linewidth = 1.5), see https://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.scatter.html.However, this is not the actual problem
Sonja-Stockhaus commentedon Jul 31, 2024
Solution for now: use
dpi/100as a factor to adaptpxto varyingdpiSonja-Stockhaus commentedon Aug 6, 2024
Now it looks like this, for dpi
[50, 100, 200, 300]usingblob.pl.render_points(element="blobs_points", size=400, color="blue").pl.render_points(element="blobs_points", size=400, color="yellow", method="datashader", alpha=1).pl.show(dpi=100)Should be correct imo
(matplotlib points bluse, datashader yellow)
LucaMarconato commentedon Aug 6, 2024
Looks good to me. The tiny pixel offset is probably inevitable and acceptable.