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Wrong spatialplot of Affine Transformation #103
Description
With this issue (#101 ) addressed, I run the tutorial Transformations and coordinate systems, https://spatialdata.scverse.org/en/latest/tutorials/notebooks/notebooks/examples/transformations.html
totally following the tutorial, when it comes to the affine transformation, it got wrong spatialplot.
theta = math.pi / 6
rotation = Affine(
[
[math.cos(theta), -math.sin(theta), 0],
[math.sin(theta), math.cos(theta), 0],
[0, 0, 1],
],
input_axes=("x", "y"),
output_axes=("x", "y"),
)
set_transformation(sdata.images["raccoon"], rotation, to_coordinate_system="global")
sdata.pl.render_images().pl.render_labels().pl.render_shapes().pl.show()
FYI:
(spatialdata) $ pip list | grep spatialdata
napari-spatialdata 0.2.4
spatialdata 0.0.10
spatialdata-io 0.0.4
spatialdata-plot 0.0.0 ## pip install the version from spatialdata-plot@bugfix/issue100-get_extent-produces-wrong-output-after-spatial-query
Activity
timtreis commentedon Jun 14, 2023
Hey @jefferyUstc, thanks for reporting this! We also noticed this yesterday, I'm working with @LucaMarconato on a fix for this (scverse/spatialdata#296). I'll ping you when it's fixed 💪