Skip to content
@sciknoworg

SciKnowOrg

Scientific Knowledge Organization (SKO group or SciKnowOrg group)

Hi there 👋

We’re passionate about building AI systems that turn scientific literature into machine-actionable knowledge—structured for AI-first discovery, search, and comparison. Here’s what we’re currently focusing on:

  • 🧠 Neuro-symbolic NLP and language models. Developing methods that combine LLMs with structured representations for robust scientific text understanding.
  • 🤖 Structured information extraction for scientific knowledge graphs. Extracting and normalizing scientific claims, methods, and results to power AI-assisted search and synthesis.
  • 📚 Knowledge organization: schemas, ontologies, and alignment. Supporting semi-automated schema and ontology engineering, including ontology learning and alignment workflows.
  • ✅ Evaluation and benchmarking. Building rubrics, benchmarks, and LLM-as-a-judge workflows to assess extraction and synthesis quality reliably.

Interested in collaborating? Reach out at sciknoworg [at] gmail.com.

Pinned Loading

  1. OntoAligner OntoAligner Public

    OntoAligner: A Python Toolkit for Ontology Alignment https://pypi.org/project/OntoAligner/

    Python 97 15

  2. schema-miner schema-miner Public

    A Human-in-the-Loop Workflow for Scientific Schema Mining with Large Language Models

    Jupyter Notebook 40 9

  3. OntoLearner OntoLearner Public

    OntoLearner: A Modular Python Library for Ontology Learning with LLMs https://pypi.org/project/OntoLearner/

    Python 115 13

  4. deep-research deep-research Public

    AI-based deep research system

    Jupyter Notebook 17 1

  5. YESciEval YESciEval Public

    YESciEval: Robust LLM-as-a-Judge for Scientific Question Answering https://pypi.org/project/YESciEval/

    Python 12 1

  6. tib-sid tib-sid Public

    TIB-SID: A bilingual (English/German) dataset of library catalog records with GND subject indexing for research on automated subject tagging and extreme multi-label classification.

    Python 4 2

Repositories

Showing 10 of 26 repositories
  • biograph Public

    Turns biographical papers about scientists into explorable knowledge graphs: dated, source-quoted events across people, places, organizations and inventions, rendered as one self-contained HTML page with a network graph, map and timeline.

    sciknoworg/biograph's past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 2, 2026
  • tabulus Public

    Scientific PDF table extraction pipeline with bibliography-aware reference processing.

    sciknoworg/tabulus's past year of commit activity
    Python 0 MIT 0 1 0 Updated Oct 2, 2026
  • scikgextract-ingest Public

    Multi-backend document ingestion service for scientific papers. Converts PDFs, Office files and HTML into normalized Markdown plus a structured metadata.

    sciknoworg/scikgextract-ingest's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 2, 2026
  • llm-atlas Public
    sciknoworg/llm-atlas's past year of commit activity
    Python 3 MIT 0 6 0 Updated Oct 1, 2026
  • OntoAligner Public

    OntoAligner: A Python Toolkit for Ontology Alignment https://pypi.org/project/OntoAligner/

    sciknoworg/OntoAligner's past year of commit activity
    Python 97 Apache-2.0 15 14 0 Updated Sep 29, 2026
  • YESciEval Public

    YESciEval: Robust LLM-as-a-Judge for Scientific Question Answering https://pypi.org/project/YESciEval/

    sciknoworg/YESciEval's past year of commit activity
    Python 12 MIT 1 26 0 Updated Sep 8, 2026
  • OntoLearner Public

    OntoLearner: A Modular Python Library for Ontology Learning with LLMs https://pypi.org/project/OntoLearner/

    sciknoworg/OntoLearner's past year of commit activity
    Python 115 MIT 13 27 1 Updated Sep 3, 2026
  • sciknoworg/sci-imageminer's past year of commit activity
    Python 0 CC-BY-4.0 0 0 0 Updated Sep 1, 2026
  • Reviewer2.0 Public
    sciknoworg/Reviewer2.0's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Aug 31, 2026
  • ALD-E-ImageMiner Public

    Expert-annotated Atomic Layer Deposition and Etching (ALD/E) figures for scientific figure comprehension

    sciknoworg/ALD-E-ImageMiner's past year of commit activity
    Python 6 4 0 0 Updated Aug 28, 2026