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Doctest directives and comments missing from code samples #80856

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@stevendaprano
BPO 36675
Nosy @terryjreedy, @gpshead, @ezio-melotti, @merwok, @stevendaprano, @jdemeyer, @willingc, @asottile, @JulienPalard, @JDLH, @csabella, @miss-islington
PRs
  • bpo-36675: Fix doctest directives comments disappear bug #13125
  • bpo-36675: Remove obsolete code. #16024
  • [3.8] bpo-36675: Remove obsolete code. (GH-16024) #16030
  • bpo-36675: Doc: Reveal doctest directives #23620
  • Files
  • missing_directives.png
  • Note: these values reflect the state of the issue at the time it was migrated and might not reflect the current state.

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    GitHub fields:

    assignee = None
    closed_at = None
    created_at = <Date 2019-04-20.10:43:50.531>
    labels = ['3.8', 'type-bug', '3.7', 'docs']
    title = 'Doctest directives and comments missing from code samples'
    updated_at = <Date 2021-10-26.04:00:41.470>
    user = 'https://github.com/stevendaprano'

    bugs.python.org fields:

    activity = <Date 2021-10-26.04:00:41.470>
    actor = 'minghua'
    assignee = 'docs@python'
    closed = False
    closed_date = None
    closer = None
    components = ['Documentation']
    creation = <Date 2019-04-20.10:43:50.531>
    creator = 'steven.daprano'
    dependencies = []
    files = ['48277']
    hgrepos = []
    issue_num = 36675
    keywords = ['patch']
    message_count = 17.0
    messages = ['340570', '340959', '342648', '342651', '342652', '342655', '342664', '344714', '352093', '352120', '352128', '367173', '383075', '383732', '384361', '385632', '385661']
    nosy_count = 14.0
    nosy_names = ['terry.reedy', 'gregory.p.smith', 'ezio.melotti', 'eric.araujo', 'steven.daprano', 'docs@python', 'jdemeyer', 'willingc', 'Anthony Sottile', 'mdk', 'JDLH', 'cheryl.sabella', 'miss-islington', 'minghua']
    pr_nums = ['13125', '16024', '16030', '23620']
    priority = 'normal'
    resolution = 'later'
    stage = None
    status = 'open'
    superseder = None
    type = 'behavior'
    url = 'https://bugs.python.org/issue36675'
    versions = ['Python 2.7', 'Python 3.7', 'Python 3.8']

    Activity

    1. stevendaprano commented on Apr 20, 2019

      @stevendaprano
      MemberAuthor

      (Apologies if this is the wrong place for reporting website bugs.)

      The website is not rendering doctest directives or comments, either that or the comments have been stripped from the examples.

      On the doctest page itself, all the comments are missing:

      https://docs.python.org/3/library/doctest.html#directives

      The first example says:

          >>> print(list(range(20))) 
          [0,   1,  2,  3,  4,  5,  6,  7,  8,  9,
          10,  11, 12, 13, 14, 15, 16, 17, 18, 19]

      but without the directive, the test would fail. Screen shot attached.

      Doctest directives are also missing from here:

      https://docs.python.org/3/library/ctypes.html

      My browser: Firefox 45.1.1

      Also checked with text browser "lynx".

    2. added
      docsDocumentation in the Doc dir
      type-bugAn unexpected behavior, bug, or error
      on Apr 20, 2019
    3. terryjreedy commented on Apr 27, 2019

      @terryjreedy
      Member

      I verified that the line in Doc/library/doctest.rst has the comment.
      "
      For example, this test passes::

         >>> print(list(range(20))) # doctest: +NORMALIZE_WHITESPACE
         [0,   1,  2,  3,  4,  5,  6,  7,  8,  9,
         10,  11, 12, 13, 14, 15, 16, 17, 18, 19]
      "
      However, the comment is omitted from the .html built on Windows by Sphinx 1.8.1.
      "
      <div class="highlight-python3 notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="nb">print</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">range</span><span class="p">(</span><span class="mi">20</span><span class="p">)))</span> 
         ***html for comment should be here***
      <span class="go">[0,   1,  2,  3,  4,  5,  6,  7,  8,  9,</span>
      <span class="go">10,  11, 12, 13, 14, 15, 16, 17, 18, 19]</span>
      </pre></div>
      </div>
      "
      To me, this is a bug with building the .html for doctest.rst.  Comments are preserved elsewhere.  For instance, the code example for https://docs.python.org/3/library/functions.html#dir.  The .rst file has
      "
         The resulting list is sorted alphabetically.  For example:
      
            >>> import struct
            >>> dir()   # show the names in the module namespace  # doctest: +SKIP
      "
      Both use 3-space colon + indents to mean 'example block'.  The only difference is '::' versus ':'.  https://devguide.python.org/documenting/#source-code says :: is required.  idle.rst also has a code example with comments displayed (I just submitted a PR to not suppress color highlighting.)

      I leave it to the doc experts to discover why the comments are not included in doctest.html.

    4. changed the title [-]Doctest directives and comments not visible or missing from code samples[/-] [+]Doctest directives and comments missing from code samples[/+] on Apr 27, 2019
    5. jdemeyer commented on May 16, 2019

      @jdemeyer
      Contributor

      Isn't it a *feature* that those doctest directives are not shown? Those directives are meant for the doctest module only, not for the reader of the rendered documentation.

    6. merwok commented on May 16, 2019

      @merwok
      Member

      OP is about the documentation page for doctest itself!

    7. terryjreedy commented on May 16, 2019

      @terryjreedy
      Member

      Doctest directives in code examples should be suppressed everywhere *except* in the doctest.html examples showing how to use directives. The patch only exposes them for doctest.html and not for ctypes or anywhere else.

      They really should not be in the dir example code that I linked to.
      https://docs.python.org/3/library/functions.html#dir
      The problem there are the double comments with both a real comment and a directive.

      https://devguide.python.org/documenting/#source-code does not say anything about '::' causing suppression of comments and ':' leaving them. It is misleading in implying the '::' is required for a code block.

    8. jdemeyer commented on May 16, 2019

      @jdemeyer
      Contributor

      Doctest directives in code examples should be suppressed everywhere *except* in the doctest.html examples showing how to use directives.

      Thanks for clarifying. I missed that.

    9. stevendaprano commented on May 16, 2019

      @stevendaprano
      MemberAuthor

      Doctest directives in code examples should be suppressed everywhere
      *except* in the doctest.html examples showing how to use directives.
      The patch only exposes them for doctest.html and not for ctypes or
      anywhere else.

      Thanks for the patch, and the extra information, but I disagree with the
      decision to suppress the directives.

      The reason I found this problem in the first case was that I started
      with the ctypes documentation, where it says:

      "Since some code samples behave differently under Linux, Windows, or Mac
      OS X, they contain doctest directives in comments."

      and I was very keen to see those directives so I could learn the right
      way to deal with platform-dependent doctests. I was very confused that
      they weren't visible.

      https://docs.python.org/3/library/ctypes.html

      I think that doctest directives are as much a part of documenting
      correct usage as any other part of the example code, and they are
      (semi-)human readable and (almost) self-documenting.

      Consider this example from ctypes:

          >>> c_wchar_p("Hello, World")
          c_wchar_p(140018365411392)

      In the absence of a directive, but knowing that it may have been
      surpressed, I don't know how to interpret that. Is the output some
      arbitrarily chosen value that doctest ought to skip? Or is that the
      actual output that c_wchar_p("Hello, World") will return every single
      time without fail?

      If I was a ctypes expert, it might be blindingly obvious to me, but I'm
      not, so I'm left in the dark. I don't know whether I should expect that
      precise output each and every time, or something platform and
      implementation specific.

      If the directive #doctest:+SKIP was visible, I would know that it was an
      arbitrarily chosen example.

      My preference would be:

      • keep the doctest directives visible, everywhere;

      • make them a clickable link to the appropriate section
        in the doctest documentation;

      • and, if possible, on mouse-over, they should display a
        tooltip with a message like

        "The output of this example is arbitrary."

      Or similar wording.

      They really should not be in the dir example code that I linked to.
      https://docs.python.org/3/library/functions.html#dir

      On the contrary: I think that the presence of the +SKIP directive helps
      demonstrate that the output shown is a made-up example, not normative.

      (Of course it helps that I know doctest, but even if I didn't, the
      tooltip message would help.)

    10. csabella commented on Jun 5, 2019

      @csabella
      Contributor

      ;tldr; There is a global configuration flag to show all the doctest directives for all the docs that are built. The default is to suppress the doctest directives. If a global setting isn't desired, then each doctest example will have to be changed individually.

      I've looked at the Sphinx documentation for this and there are a few points to reference.

      • `::` defines a Literal block in reST. [1] A literal block doesn't do anything special except from the last paragraph is this section of the docs:
        "Code highlighting can be enabled for these literal blocks on a document-wide basis using the `highlight` directive and on a project-wide basis using the `highlight_language` configuration option. The code-block directive can be used to set highlighting on a block-by-block basis. These directives are discussed later." CPython has the `highlight-language` set to python3.

      • A doctest block does not need to be in a Literal Block. [2] They are identified automatically. [3] According to the doc, doctest directives are suppressed from presentation:

        Also, you can give inline doctest options, like in doctest:

          >>> datetime.date.now()   # doctest: +SKIP
          datetime.date(2008, 1, 1)
      They will be respected when the test is run, but stripped from presentation output.
      
      • Any section (doesn't need the single colon (`:`) can have the `code-block` directive on it. [4] The `code-block` directive can define the language for highlighting.

      Note that in the Sphinx doctest [4] documentation, there is a config option trim_doctest_flags, which is True by default. Setting this to False will show all the doctest directives for all the doctests in the documentation.

      The nice thing about the doc build recognizing a section as a doctest is that it adds the toggle in the upper right of the block to 'Hide the toggle and output' so that the example can be copy and pasted more easily. Changing it into something other than a doctest (like using a code-block directive, takes away this option. Using trim_doctest_flags=False retains the hide button.

      Options:

      1. Change global setting to false to show all doctest directives.
      2. Change only the blocks where the doctest directives need to be shown, but this makes them lose the 'Hide prompt and output' button.
      3. Add a new option under 'code-block' to control the displaying of the doctest directives at the code-block level. This would override the global setting. I think this option could be added locally, but may need to be done upstream in Sphinx.

      [1] http://www.sphinx-doc.org/en/stable/usage/restructuredtext/basics.html#literal-blocks
      [2] http://www.sphinx-doc.org/en/stable/usage/restructuredtext/basics.html#doctest-blocks
      [3] http://www.sphinx-doc.org/en/stable/usage/extensions/doctest.html
      [4] http://www.sphinx-doc.org/en/stable/usage/restructuredtext/directives.html#showing-code-examples

    11. JulienPalard commented on Sep 12, 2019

      @JulienPalard
      Member

      I opened an issue on the sphinx-doc repo 1 to check if it would be possible to have an option in doctest blocks to not trim them.

      We previously had a hack in Doc/tools/extensions/pyspecific.py to patch sphinx to not trim them for the doctest.rst file. But sphinx deprecated the hack we used :(

    12. 4 remaining items

    13. JulienPalard commented on Dec 25, 2020

      @JulienPalard
      Member

      Happy Christmas, everybody involved in this issue! I'm happy to announce this issue is resolved since a few days \o/

    14. asottile commented on Jan 5, 2021

      asottilemannequin
      Mannequin

      should the minimum sphinx version be bumped and/or this reverted:

      needs_sphinx = '1.8'

      this change breaks, for example, sphinx 1.8.5 while building for ubuntu 20.04

      The directive used here requires sphinx>=3.2.0

      I notice some other attempts have been made to make the docs more compatible with sphinx 1.x in this release as well so there might be conflicting directions here: b63a620

    15. JulienPalard commented on Jan 25, 2021

      @JulienPalard
      Member

      Due to #24282 this is sadly un-fixed.

      Either we find another way to fix this, either we wait 3 releases and we re-commit #23620.

    16. jdlh commented on Jan 25, 2021

      jdlhmannequin
      Mannequin

      My goodness, things get complex sometimes.

      If we cannot make Sphinx preserve doctest directives and comments, perhaps we should go back to the historical bug discussion to look at workarounds which we considered earlier. For instance, maybe we should modify the text surrounding the examples to explain that doctests directives should appear there, but that our tool chain currently removes them.

      At the moment, I see doctest directives in the doctest source code at:
      https://github.com/python/cpython/blob/master/Doc/library/doctest.rst#directives
      which do not appear in the corresponding HTML output at:
      https://docs.python.org/3/library/doctest.html#directives

      How about rewording the text before each of those examples? Or maybe finding some way to show those examples as literal text which Sphinx won't modify, even if it is not formatted like Python code examples?

      By the way, the discussion of this same problem back in 2011-2012 is at bpo-12947 . At that time, we applied a "monkey patch" to the Sphinx code. I haven't read the discussion closely enough to figure out if such a patch would help now.

    17. transferred this issue fromon Apr 10, 2022
    18. sorcio commented on May 5, 2022

      @sorcio
      Contributor

      Due to #24282 this is sadly un-fixed.

      Either we find another way to fix this, either we wait 3 releases and we re-commit #23620.

      Since docs are now built on Sphinx 4.5.0, it might be a good time to re-fix this.

      I applied a cherry-picked eb7fcb8 locally and it seems to work fine.

      Made this into a new PR #92318

    19. added a commit that references this issue on May 8, 2022
    20. added 4 commits that reference this issue on May 8, 2022
    21. ezio-melotti commented on May 8, 2022

      @ezio-melotti
      Member

      This is now fixed on 3.10/3.11/main.
      Thanks for the PR!

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