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Okinawa Institute of Science & Technology

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  1. Usiigaci Usiigaci Public

    Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

    Jupyter Notebook 207 68

  2. LaTeX-templates LaTeX-templates Public

    Graduate School LaTeX templates for Lab rotation proposal + report, OIST beamer and Thesis + thesis proposal

    70 58

  3. optinist optinist Public

    calcium imaging pipeline tool

    TypeScript 50 17

  4. DenseObjectDetection DenseObjectDetection Public

    Detection of objects in an image using segmentation

    Python 38 15

  5. Physics-of-Behavior-Tutorials Physics-of-Behavior-Tutorials Public

    Jupyter Notebook 37 5

  6. DenseObjectAnnotation DenseObjectAnnotation Public

    Tool to annotate objects in images.

    JavaScript 20 8

Repositories

Showing 10 of 213 repositories
  • GenomicBreaks Public

    Pairwise Alignment Breakpoint Analysis

    oist/GenomicBreaks's past year of commit activity
    R 6 3 23 1 Updated Nov 12, 2026
  • mlss2027okinawa Public

    Machine Learning Summer School 2027

    oist/mlss2027okinawa's past year of commit activity
    HTML 1 MIT 0 0 0 Updated Nov 12, 2026
  • medaka-3d Public

    Three-camera 3D behaviour tracking for medaka mating experiments (rebuild of medaka-mating-pipeline)

    oist/medaka-3d's past year of commit activity
    Python 0 0 0 0 Updated Nov 12, 2026
  • neuro-workflow Public
    oist/neuro-workflow's past year of commit activity
    Jupyter Notebook 19 9 10 15 Updated Nov 12, 2026
  • cpr-samlauth-role-map Public

    Role mapping feature for Drupal 8 SAML Authentication module

    oist/cpr-samlauth-role-map's past year of commit activity
    PHP 0 1 4 0 Updated Nov 11, 2026
  • AntsArray Public
    oist/AntsArray's past year of commit activity
    Python 1 0 0 0 Updated Nov 11, 2026
  • LuscombeU_Oikopleura_Selenoproteins Public
    oist/LuscombeU_Oikopleura_Selenoproteins's past year of commit activity
    Python 0 0 0 0 Updated Nov 11, 2026
  • medaka-mating-pipeline Public

    Quantitative analysis of Medaka (Oryzias latipes) mating dynamics. Investigates the interplay of female choice, male courtship, and aggression using video data to identify behavioral determinants of mating decisions.

    oist/medaka-mating-pipeline's past year of commit activity
    Python 0 0 0 0 Updated Nov 10, 2026
  • git-tic-tac-toe-workshop Public Forked from igorsdub/git-tic-tac-toe-workshop

    A Git and GitHub workshop built around paired tic-tac-toe

    oist/git-tic-tac-toe-workshop's past year of commit activity
    Python 0 1 0 0 Updated Nov 10, 2026
  • Plessy_pairgenomealign_3.0_paper Public

    Research article describing the nf-core/pairgenomealign 3.0 pipeline.

    oist/Plessy_pairgenomealign_3.0_paper's past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Nov 9, 2026
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