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@khanlab

Khan Computational Imaging Lab

  • 29 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 70 25

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 24 14

  3. zarrnii zarrnii Public

    Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

    Python 11 4

  4. tar2bids tar2bids Public

    Python 9 9

  5. SPIMquant SPIMquant Public

    SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

    Python 8 3

  6. mp2rage_genUniDen mp2rage_genUniDen Public

    Generates UNI-DEN image from UNI, Inv1 and Inv2 images

    MATLAB 7 1

Repositories

Showing 10 of 142 repositories
  • hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    khanlab/hippunfold's past year of commit activity
    Python 70 MIT 25 32 3 Updated Nov 6, 2026
  • snakebids Public

    Snakemake + BIDS

    khanlab/snakebids's past year of commit activity
    Python 24 MIT 14 24 10 Updated Nov 6, 2026
  • SPIMquant Public

    SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

    khanlab/SPIMquant's past year of commit activity
    Python 8 3 6 9 Updated Nov 6, 2026
  • vesselFM Public Forked from bwittmann/vesselFM

    A foundation model for universal 3D blood vessel segmentation. Paper accepted @ CVPR25.

    khanlab/vesselFM's past year of commit activity
    Python 1 GPL-3.0 35 0 1 Updated Nov 5, 2026
  • SPIMpack Public

    Package up SPIM datasets into local or remote BIDS datasets

    khanlab/SPIMpack's past year of commit activity
    Python 2 MIT 0 1 0 Updated Nov 5, 2026
  • actions Public

    Centralized repo of reusable GH actions

    khanlab/actions's past year of commit activity
    1 3 0 2 Updated Nov 5, 2026
  • khanlab.github.io Public

    Khan Lab website

    khanlab/khanlab.github.io's past year of commit activity
    HTML 2 17 1 3 Updated Nov 1, 2026
  • cfmm2bids Public

    Snakemake workflow for pulling cfmm dicom server data into bids

    khanlab/cfmm2bids's past year of commit activity
    Python 3 1 3 3 Updated Oct 27, 2026
  • zarrnii Public

    Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

    khanlab/zarrnii's past year of commit activity
    Python 11 4 3 9 Updated Oct 27, 2026
  • FireANTs Public Forked from rohitrango/FireANTs

    Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration

    khanlab/FireANTs's past year of commit activity
    Python 0 41 0 1 Updated Oct 24, 2026
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