Skip to content
View jwreda's full-sized avatar
2 followers · 6 following

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: YOLOAchievement: Quickdraw

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: YOLOAchievement: Quickdraw

Block or report jwreda

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Content in all repositories owned by your account will be closed.
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
jwreda/README.md

Hi, I'm Joe Reda

Software

  • Flow Harvest: retrieve hand-analyzed flow cytometry data ergonomically, efficiently, and reproducibly, without compromising on accuracy.
  • BioSequence for Obsidian: view amino acid, DNA and RNA sequences in Obsidian notes, with per-residue coloring, biophysical properties, pairwise alignment, and auto-highlighting of known motifs.
  • IL-10 in treatment-naive MS: single-cell reanalysis of blood and CSF for our bioRxiv preprint.
  • Immunophenotyping heatmaps: reproducible flow-cytometry heatmap pipeline for a Hubbell Lab publication.

Elsewhere: joereda.phd · ORCID

Pinned Loading

  1. flow-harvest flow-harvest Public

    Batch-export FlowJo gate statistics (frequencies, MFIs) to a tidy table without clicking through every gate. Built on FlowKit.

    Python

  2. il10-in-treatment-naive-ms il10-in-treatment-naive-ms Public

    HTML

  3. obsidian-biosequence obsidian-biosequence Public

    TypeScript

  4. sail33_immunophenotyping_heatmaps sail33_immunophenotyping_heatmaps Public

    HTML

  5. Chun2026_TSD_immunophenotyping Chun2026_TSD_immunophenotyping Public

    Flow cytometry immunophenotyping heatmaps for a Hubbell Lab publication.

    JavaScript