[delete-cloud]

What

Batch 2 of the package-layout consolidation: relocate 13 mid-traffic top-level modules into cohesive subpackages. Old import paths preserved via shims / in-place package conversion — no call-site changes required.

New packages (bee/) + B-shims: bee_command_bridge|launch|runtime|template_pack|workspace.py → bee/*.py
Observability: observability.py → observability/config.py (A); agent_observability.py → observability/agent.py (B); metrics.py → observability/metrics.py (B)
Adapter: adapter.py → adapter/pipeline.py (A); adapter_types.py → adapter/types.py (B)
Core: app.py → core/app.py (B); agent_identity.py → core/agent_identity.py (B)
KB: kb.py → kb/rag.py (A) — distinct from plugins/kb.py

• A = module→package: __init__.py re-exports the full public surface (import * + explicit non-public names).
• B = sys.modules alias shim at the old path.

Notable in-package repoints (to break import cycles / fix path-relative logic)

• Bee internal imports → coding_agent.bee.*; bee/__init__.py uses lazy re-exports.
• adapter/pipeline.py → coding_agent.adapter.types, coding_agent.observability.agent, coding_agent.redaction.
• core/app.py agent.toml default fixed to Path(__file__).parents[1] / "agent.toml" (package root).
• kb/rag.py preserves monkeypatch/private-name behavior (Progress, _source_id, fetch-cap constants).

Verification (independent, outside codex sandbox)

• uv run pytest -q: 3725 passed, 8 skipped, 20 xfailed
• All 13 old import paths succeed in fresh processes.
• A-package re-exports: every public name is identity-equal between coding_agent.<pkg> and coding_agent.<pkg>.<mod> (no missing/divergent objects).
• core/app.py resolves the default agent.toml to package root.

Batch 2 of 4. Spec: .opencode/prompts/tasks/package-layout-consolidation-task-packet.md.

🤖 Generated with Claude Code

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ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro Plus

Run ID: a84ab17a-8163-41ea-9f4e-22237d5fafb3

📥 Commits

Reviewing files that changed from the base of the PR and between 444531c and d74b4af.

📒 Files selected for processing (27)

• coding-agent/src/coding_agent/adapter/__init__.py
• coding-agent/src/coding_agent/adapter/pipeline.py
• coding-agent/src/coding_agent/adapter/types.py
• coding-agent/src/coding_agent/adapter_types.py
• coding-agent/src/coding_agent/agent_identity.py
• coding-agent/src/coding_agent/agent_observability.py
• coding-agent/src/coding_agent/app.py
• coding-agent/src/coding_agent/bee/__init__.py
• coding-agent/src/coding_agent/bee/command_bridge.py
• coding-agent/src/coding_agent/bee/launch.py
• coding-agent/src/coding_agent/bee/runtime.py
• coding-agent/src/coding_agent/bee/template_pack.py
• coding-agent/src/coding_agent/bee/workspace.py
• coding-agent/src/coding_agent/bee_command_bridge.py
• coding-agent/src/coding_agent/bee_launch.py
• coding-agent/src/coding_agent/bee_runtime.py
• coding-agent/src/coding_agent/bee_template_pack.py
• coding-agent/src/coding_agent/bee_workspace.py
• coding-agent/src/coding_agent/core/agent_identity.py
• coding-agent/src/coding_agent/core/app.py
• coding-agent/src/coding_agent/kb/__init__.py
• coding-agent/src/coding_agent/kb/rag.py
• coding-agent/src/coding_agent/metrics.py
• coding-agent/src/coding_agent/observability/__init__.py
• coding-agent/src/coding_agent/observability/agent.py
• coding-agent/src/coding_agent/observability/config.py
• coding-agent/src/coding_agent/observability/metrics.py

✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch refactor/layout-batch2

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