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In some cases it would be helpful to parse comments from BNGL files #2
Description
bionetgen.bngmodel nicely parses models. In some cases, it may be helpful to parse the comments out of files.
For example, the comment of Vec is currently parsed to None
begin parameters
Vec 1000*Vcell # Volume of extracellular space around each cell (1/cell density)
end parameters
model = bionetgen.bngmodel(...)
model.parameters['Vec'].comment
Activity
[-]Parse comments from BNGL files[/-][+]In some cases it would be helpful to parse comments from BNGL files[/+]ASinanSaglam commentedon Jun 8, 2021
The comments are not parsed at all right now due to how parsing works currently (conversion to an XML file and reading off of that). XML conversion rips out all comments so it's not possible to parse the comments with this method. We are working on a new parsing method right now and once that's done, all comments will be parsed and will be added to
.commentattribute. I'll update the issue as I make progress on this.Merge pull request #2 from cjarmstrong97/Info_Subcommand
chore: remove .jules artifacts and apply black formatting for PR #2