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Mompel226/README.md

Dr Daniel Mompel Riera

Biology teacher · North London Collegiate School Jeju
KS3 Science · Cambridge IGCSE Biology 0610 · IB Biology
and free, open-source tools for the classroom

nlcsbiology.com Email Jeju bouldering

Free for any school to use and change.
Most of it is running in my own classroom first.


🧬  Now

KS3 Science, Cambridge IGCSE Biology 0610 and IB Biology at NLCS Jeju. Alongside the teaching I build the revision hub my students use, and small apps that take the admin off a teacher's desk.

🔬  Before

PhD in Microbiology, University of Portsmouth, UK — the microbial ecology of the marine environment, integrating meta-omic and metabolomic tools into its study, and the bioinformatics that follows. Before that, veterinary medicine and aquaculture.

🪨  Outside school

Mapping a free bouldering topo for Jeju, so anyone climbing here can find the rock without paying for it — @jeju_bouldering.


Why it is all free

I teach at a school with real stability and real resources. Not every school has that, and not every teacher has the time to build their own tools on top of a full timetable.

So the point of this account is to spend the comfort I have on the people who do not: to put working, finished things where any school can take them, and to lift some weight off teachers who are already carrying enough. Where AI helps me build these faster, that is what it is used for — making tools that are open and shared, not shut behind a licence.

If something here is nearly right for your school, fork it and change it. That is what it is for.

For students

Interactive revision for Cambridge IGCSE Biology 0610 — four shelves, and behind each, labs where the questions mark themselves. Beside it: writing exam answers and lab reports, R in the browser, and pages for Key Stage 3 and IB. No sign-up, nothing to install.

Start here
At NLCS Jeju nlcsbiology.com — the revision hub, Bio English Lab and Write-Up Lab, plus the school's own co-curricular activities, societies, the Diving Bryant and community enterprises. Sign in with your school account and it also carries your assessment record.
Any other school igcse-biology-hub — the same revision hub with the NLCS-only parts taken out. Yours to host, yours to change.

The revision hub and its labs

Repository What it is
biology-hub the hub itself — the four shelves and the way in
classification-lab Topic 1 — characteristics and classification of living organisms
cells-lab Topic 2 — organisation of the organism, and the microscope: drawing and measuring cells
digestion-lab Topic 7 — human nutrition
circulation-lab Topic 9 — transport in animals
immunity-lab Topic 10 — diseases and immunity: pathogens, the body's defences, antibodies, vaccination, cholera
inheritance-lab Topic 17 — inheritance: chromosomes and genes, mitosis and meiosis, Punnett squares, codominance, sex linkage
plants-lab Topics 6, 8, 14.5, 16.3 and 18.2 — one plant, seed to fruit
foundations-hub · human-body-hub · plants-hub · life-on-earth-hub the shelves themselves — a map you point at

Writing and data

Repository What it is
bio-english-lab writing exam answers that score — describe, explain, plan — and the key words of every topic
write-up-lab lab reports, from IGCSE to the IB Internal Assessment and Extended Essay
learn-r real R, running in the browser with nothing to install — three courses: Year 8, IB statistics and IB B1.1 starch curves

Key Stage 3

Repository What it is
ks3-separating-mixtures-pract Y7 Chemistry practical: separating mixtures — eight separation methods, run on a virtual lab bench
ks3-y7-chemistry-revision Y7 Chemistry revision: states of matter, atoms and mixtures — notes, pictures to explore and checks, with Korean and Chinese for every key word
ks3-y7-cell-organelles Y7 Biology practical: cell structures and organelles — a 3D game inside a salivary gland cell: explore its organelles, make amylase and release it

IB

Repository What it is
protein-enzyme-sim B1.2 and C1.1 — build polypeptides, run enzymes, break them with heat and pH
A22-microscopy-skills-pract IB Biology practical: microscopy skills (A2.2.2) — calibrate a graticule, measure cells, scale bars and the rules for a drawing
B11-starch-calibration-curve-pract IB Biology practical: starch calibration curve (B1.1) — the whole practical, including why the standard starch protocol misbehaves
B41-rocky-shore-fieldwork-pract IB Biology practical: rocky shore fieldwork (B4.1) — transects and quadrats on a virtual shore, chi-squared and correlation

For teachers

Small Mac apps for the jobs that eat a morning. Both read reports iSAMS already produces, and both run entirely on your own machine — no account, no server, nothing sent anywhere. See them here.

Repository What it is
seating-plan draw the room once, then drag photographs into chairs
birthday-reminder tells you whose birthday it is, in the morning, before you teach them

Student-led

Repository What it is
veterinary-society clinical cases, hands-on skills, animal behaviour — and the students' own magazine

From the PhD

Repository What it is
metaGVis an R package for microbial ecology — QC and publication-ready plots, working straight from MOTHUR, DADA2, Kraken2, MetaPhlAn3 and HUMAnN3 output

Licence

Two licences, because there are two kinds of work here.

What Licence
The software AGPL-3.0 — use it, change it, run it. Change it and let others use it, including over a network, and you publish your source under the same terms.
The teaching material — questions, explanations, diagrams CC BY-NC-SA 4.0 — free for teaching, not for selling, and the credit stays.

Third-party images keep their own licences; each repository credits them.

I hold the copyright, so other terms are possible. If you want to use any of this commercially, ask me — dmompelriera@nlcsjeju.kr.

Popular repositories Loading

  1. metaGVis metaGVis Public

    An R package that performs multiple microbial ecology analyses and outputs QC and ready to publish plots. It can directly work with the output files of MOTHUR, DADA2, Kraken2, MetPhlAn3 and HUMAnN3.

    R 1

  2. human-body-hub human-body-hub Public

    HTML 1

  3. Mompel226 Mompel226 Public

    Config files for my GitHub profile.

  4. B11-starch-calibration-curve-pract B11-starch-calibration-curve-pract Public

    Complete IB Biology B1.1 starch calibration practical — worksheet, self-calculating Excel workbook, and an optional R guide. Includes why the standard 1% starch protocol might not work.

    HTML

  5. protein-enzyme-sim protein-enzyme-sim Public

    Interactive IB Biology simulation — build polypeptides, run enzymes, break them with heat and pH (B1.2 Proteins · C1.1 Enzymes)

    HTML

  6. digestion-lab digestion-lab Public

    Interactive IGCSE Biology 0610 Topic 7 (Human nutrition) revision simulation

    JavaScript