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@KChen-lab

KChen-lab

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  1. Monopogen Monopogen Public

    SNV calling from single cell sequencing

    HTML 119 27

  2. METAFlux METAFlux Public

    HTML 91 16

  3. bindSC bindSC Public

    Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data

    R 42 7

  4. Cyclum Cyclum Public

    Identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations

    Python 23 5

  5. SCMER SCMER Public

    Marker Selection by matching manifolds and elastic net

    HTML 23 4

  6. Texomer Texomer Public

    Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data

    R 21 8

Repositories

Showing 10 of 41 repositories
  • sensei Public

    Sample size estimation for single cell studies

    KChen-lab/sensei's past year of commit activity
    HTML 1 MIT 0 0 0 Updated Oct 15, 2026
  • ST_Comparison Public

    Codes of images in Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples

    KChen-lab/ST_Comparison's past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Sep 8, 2026
  • PM_heterogeneity_paper Public

    This is the code repository for our paper.

    KChen-lab/PM_heterogeneity_paper's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Aug 19, 2026
  • Avelumab_OX40_4-1BB_trial Public

    Code for Avelumab_OX40_4-1BB_trial

    KChen-lab/Avelumab_OX40_4-1BB_trial's past year of commit activity
    R 0 0 0 0 Updated Jul 6, 2026
  • TCR-FramePose Public
    KChen-lab/TCR-FramePose's past year of commit activity
    Python 0 0 0 0 Updated Jun 11, 2026
  • ABMACT Public

    ABMACT project code

    KChen-lab/ABMACT's past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated May 21, 2026
  • Abema_fas_Ovarian Public

    This repository includes scripts to generate figures of the paper that are generated with GeoMx DSP WTA data.

    KChen-lab/Abema_fas_Ovarian's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Feb 2, 2026
  • HPV-specific-TCR Public

    Code for the paper on HPV16-specific TCRs

    KChen-lab/HPV-specific-TCR's past year of commit activity
    0 GPL-3.0 0 0 0 Updated Feb 2, 2026
  • ICKG Public
    KChen-lab/ICKG's past year of commit activity
    Jupyter Notebook 7 1 1 0 Updated Nov 5, 2025
  • KChen-lab/immune-knowledgegraph.github.io's past year of commit activity
    HTML 0 1 0 0 Updated Aug 15, 2025

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