Skip to content

Seeking help for dataset #60

Open
Open

Description

@zsc2003

Hi, thank you so much for your outstanding work!

I'm interested in your models and would like to run them on. Could you please tell me how to generate or download your EC, GO, and FC dataset?

Thank you!

Activity

  1. Oxer11 commented on Mar 14, 2024

    @Oxer11
    Collaborator

    Hi, please find the datasets here (https://zenodo.org/records/7593591), or you can use the code to download it automatically. Also, a processed version can be found in the CDConv repo (https://github.com/hehefan/Continuous-Discrete-Convolution).

  2. zsc2003 commented on Mar 17, 2024

    @zsc2003
    Author

    Thank you so much for providing help. But I noticed that the downloaded dataset only container the PDB files, could you please tell me how I could find or generate the labels of each PDB for each of there tasks? Thank you!

  3. Oxer11 commented on Mar 17, 2024

    @Oxer11
    Collaborator

    Hi, could you please re-check the downloaed files? There should be a file called nrPDB-EC_annot.tsv in the EnzymeCommission.zip file, which contains the labels.

  4. zsc2003 commented on Mar 20, 2024

    @zsc2003
    Author

    Thank you so much.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions