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VAMP-seq workflow #50
Description
We should use this combination of CountESS ini file and notebook from @dlholmes2117 as the definitive VAMP-seq workflow: https://github.com/FowlerLab/TSC2_analysis
We'll want to ship a simpler version that only has one library/region, but all the functionality in this analysis should be possible within the pipeline.
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nickzoic commentedon May 13, 2026
Okay there's a VAMPseq example now, using the new plugin.