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VAMP-seq with replicates #45

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@afrubin

When performing an analysis of a VAMP-seq dataset with multiple replicates, I had to:

  • Create Expression plugins to drop the other replicate counts for each replicate
  • Run the VAMP-seq plugin on each of these new single-replicate count data frames
  • Merge the replicate scores
  • Rename the score columns

This was a bit clumsy, so adding a field where count columns can be assigned to replicates in addition to the weights field would be a nice convenience.

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  1. added a commit that references this issue on Jan 14, 2026
  2. added
    enhancementNew feature or request
    workflowRelated to a specific workflow or analysis
    and removed
    enhancementNew feature or request
    on Mar 12, 2026
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