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When performing an analysis of a VAMP-seq dataset with multiple replicates, I had to:
Create Expression plugins to drop the other replicate counts for each replicate
Run the VAMP-seq plugin on each of these new single-replicate count data frames
Merge the replicate scores
Rename the score columns
This was a bit clumsy, so adding a field where count columns can be assigned to replicates in addition to the weights field would be a nice convenience.
Activity
add multi column grouping to vampseq #45 although it does feel like t…