Run CoreNEURON MOD file functional tests in online mode #310

# install neuron
git clone https://github.com/neuronsimulator/nrn.git
mkdir nrn/build
cd nrn/build
cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/install -DPYTHON_EXECUTABLE=`which python3.6` -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_MOD_COMPATIBILITY=ON
make -j install

# install coreneuron
git clone https://github.com/BlueBrain/CoreNeuron.git
mkdir CoreNeuron/build
cd CoreNeuron/build
cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/install
make -j install

git clone https://github.com/nrnhines/testcorenrn.git
cd /testcorenrn
$HOME/install/bin/nrnivmodl mod
$HOME/install/bin/nrnivmodl-core mod

#!/bin/sh

names="deriv gf kin conc watch vecplay"

# run neuron
for i in $names ; do
  x86_64/special -c sim_time=100 test${i}.hoc
  cat out${i}.dat | sort -k 1n,1n -k 2n,2n > out_nrn_${i}.spk
  rm out${i}.dat
done

# run coreneuron direct memory mode
for i in $names ; do
  x86_64/special -c sim_time=100 -c coreneuron=1 test${i}.hoc
  cat out.dat | sort -k 1n,1n -k 2n,2n > out_core_online_${i}.spk
  rm out.dat
done

# run coreneuron file transfer mode
for i in $names ; do
  x86_64/special-core -d test${i}dat --cell-permute 1 -e 100
  cat out.dat | sort -k 1n,1n -k 2n,2n > out_core_file_${i}.spk
  rm out.dat
done

for i in $names ; do
  diff -w -q out_nrn_${i}.spk out_core_online_${i}.spk
  diff -w -q out_nrn_${i}.spk out_core_file_${i}.spk
done