Issues

• Where to specify available dependencies?

  BioImageTools/nextflow-modules#14 · Filter by author tischi opened on May 3, 2026
  1

• Make CellPose run with OME-Zarr

  BioImageTools/nextflow-modules#13 · Filter by author tischi opened on Apr 14, 2026
  7

• Maintaining pixel calibration in CellPose

  BioImageTools/nextflow-modules#12 · Filter by author tischi opened on Apr 13, 2026
  1

• How to create an "output table" when batch processing multiple images

  BioImageTools/nextflow-modules#11 · Filter by author tischi opened on Mar 29, 2026
  3

• Running Cellpose on the 5th channel of an image

  BioImageTools/nextflow-modules#10 · Filter by author tischi opened on Mar 23, 2026
  1

• How to handle module specific parameters

  BioImageTools/nextflow-modules#9 · Filter by author tischi opened on Feb 20, 2026
  9

• How to handle different versions of modules

  BioImageTools/nextflow-modules#8 · Filter by author tischi opened on Feb 18, 2026
  6

• new module: deconvolution

  BioImageTools/nextflow-modules#7 · Filter by author felixS27 opened on Feb 17, 2026
  1

  

• running modules on subregions of one image

  enhancement
  BioImageTools/nextflow-modules#6 · Filter by author tischi opened on Jan 24, 2026
  28

• new module: clij2-fft

  enhancement
  Feature

  BioImageTools/nextflow-modules#5 · Filter by author BioinfoTongLI opened on Jan 23, 2026

• documentation for running existing nextflow imaging modules

  documentation
  Task

  BioImageTools/nextflow-modules#4 · Filter by author tischi opened on Jan 23, 2026
  1

• Nextflow module sharing

  BioImageTools/nextflow-modules#3 · Filter by author krokicki opened on Jan 23, 2026
  7

• Which conainer repo is used?

  BioImageTools/nextflow-modules#1 · Filter by author BioinfoTongLI opened on Mar 27, 2024
  3