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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 398 163

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 517 repositories
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims's past year of commit activity
    Python 0 MIT 1 4 0 Updated Oct 4, 2026
  • CHARGE Public

    Cell HierARchy Gene Explorer (CHARGE) is an interactive tool for identifying genes of potential biological interest in a cell type taxonomy.

    AllenInstitute/CHARGE's past year of commit activity
    R 2 0 1 0 Updated Oct 4, 2026
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    AllenInstitute/neuroglancer's past year of commit activity
    TypeScript 0 Apache-2.0 420 0 1 Updated Oct 3, 2026
  • biodata-schema Public

    Complete and accurate metadata for bioscience

    AllenInstitute/biodata-schema's past year of commit activity
    Python 2 MIT 0 69 2 Updated Oct 3, 2026
  • CeleryMetricsExporter Public

    Export celery metrics with Prometheus client

    AllenInstitute/CeleryMetricsExporter's past year of commit activity
    Python 0 MIT 1 0 1 Updated Oct 3, 2026
  • ConnectsCommonConnectivity Public

    A repository to organize data models and code for creating a pilot common connectivity matrix for BRAIN CONNECTS

    AllenInstitute/ConnectsCommonConnectivity's past year of commit activity
    Jupyter Notebook 4 MIT 1 30 (1 issue needs help) 2 Updated Oct 3, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 22 BSD-3-Clause 10 56 13 Updated Oct 3, 2026
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis's past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Oct 2, 2026
  • HMBA_WB_Atlas Public
    AllenInstitute/HMBA_WB_Atlas's past year of commit activity
    Python 0 0 29 1 Updated Oct 2, 2026
  • zarr-vectors-tools Public

    Tools and workflows based on the zarr-vectors-py API.

    AllenInstitute/zarr-vectors-tools's past year of commit activity
    Python 6 2 1 0 Updated Oct 2, 2026