Issues

• Access to the assembly graph?

  soedinglab/plass#57 · Filter by author zhangwenda0518 opened on Dec 19, 2025

• How to improve N50 of contigs

  soedinglab/plass#56 · Filter by author zhangwenda0518 opened on Nov 30, 2025

• PenguiN for not-metagenomic assembly

  soedinglab/plass#55 · Filter by author sav-che opened on Jul 28, 2025
  2

• Performance recommendations for running PenguiN on high-RAM servers with HDDs

  soedinglab/plass#54 · Filter by author Enkabloza opened on May 2, 2025

• PenguiN Reproducibility

  soedinglab/plass#53 · Filter by author MTDouglas opened on Dec 26, 2024

• Manual PenguiN

  soedinglab/plass#52 · Filter by author SergeyBaikal opened on Dec 24, 2024

• Penguin performance for ITS/18S assembly and potential implementation for metagenome binning?

  soedinglab/plass#51 · Filter by author metaganal opened on Dec 20, 2024

• SNPs introduced when using high --max-iterations

  soedinglab/plass#50 · Filter by author Markusjsommer opened on Nov 1, 2024

• Feature requests: (Un)trusted contigs and mixed read types support

  soedinglab/plass#49 · Filter by author ohickl opened on Sep 13, 2024

• Data Access

  soedinglab/plass#48 · Filter by author shengxiaobufu opened on Aug 24, 2024
  1

• Penguin: no assembled contigs

  soedinglab/plass#47 · Filter by author cv-1993 opened on Aug 14, 2024

• Insights needed for comparison with other assemblers

  soedinglab/plass#46 · Filter by author GeoMicroSoares opened on Apr 16, 2024
  1

• Quality trimming reads?

  soedinglab/plass#44 · Filter by author timghaly opened on Feb 19, 2024
  2

• mmseqs extractorfs can tranlate orfs but CLI does not allow to specify tranlation table

  soedinglab/plass#42 · Filter by author SilasK opened on Mar 10, 2023
  2

• Quantification

  soedinglab/plass#40 · Filter by author stheil15 opened on Jan 23, 2023

• Paired read prediction - mergereads failed

  soedinglab/plass#38 · Filter by author dnolin13 opened on Mar 11, 2022
  3

• Install issues

  soedinglab/plass#37 · Filter by author slschnorr opened on Jan 14, 2022
  6

• Use PLASS in metatranscriptomic data

  soedinglab/plass#35 · Filter by author jjsanchezgil opened on Feb 23, 2021
  5

• Empty (len:0) sequences in plass output

  soedinglab/plass#33 · Filter by author aleixop opened on Feb 18, 2021
  4

• Some Issues about the length of protein sequences

  soedinglab/plass#31 · Filter by author susutBu opened on Nov 13, 2020
  2

• The output file is empty

  soedinglab/plass#29 · Filter by author Sami-Altayyar opened on Aug 3, 2020
  1

• Use Plass for euk metagenomics data

  soedinglab/plass#28 · Filter by author liuxianghui opened on Jul 15, 2020
  2

• Error running mpi job with class

  soedinglab/plass#27 · Filter by author liuxianghui opened on Jun 10, 2020
  1

• missing handling of small number of input reads

  soedinglab/plass#26 · Filter by author mr-eyes opened on May 25, 2020
  7

• map of input sequences to assembled sequence

  enhancement
  soedinglab/plass#25 · Filter by author galicae opened on May 18, 2020